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deepmind-research/alphafold_casp13/asa_output.py
Yilei Yang f4916dadab Remove unused comments related to Python 2 compatibility.
PiperOrigin-RevId: 443298684
2022-05-26 17:44:51 +01:00

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Python

# Copyright 2019 DeepMind Technologies Limited
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Class for predicting Accessible Surface Area."""
import tensorflow as tf # pylint: disable=g-explicit-tensorflow-version-import
class ASAOutputLayer(object):
"""An output layer to predict Accessible Surface Area."""
def __init__(self, name='asa'):
self.name = name
def compute_asa_output(self, activations):
"""Just compute the logits and outputs given activations."""
asa_logits = tf.contrib.layers.linear(
activations, 1,
weights_initializer=tf.random_uniform_initializer(-0.01, 0.01),
scope='ASALogits')
self.asa_output = tf.nn.relu(asa_logits, name='ASA_output_relu')
return asa_logits